PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.383230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 266aa    MW: 31418.6 Da    PI: 10.1464
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.383230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-182269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll ++v+ +G g+W+++a+  g++R +k+c++rw +yl
   Cucsa.383230.1 22 KGPWTAEEDRLLMEYVRVHGEGRWNSVAHLAGLRRNGKSCRLRWVNYL 69
                     79********************************************97 PP

2Myb_DNA-binding51.81.9e-1675119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
   Cucsa.383230.1  75 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                      7888******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5571773IPR017930Myb domain
SuperFamilySSF466893.44E-3019116IPR009057Homeodomain-like
SMARTSM007173.3E-152171IPR001005SANT/Myb domain
PfamPF002498.0E-172269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-242376IPR009057Homeodomain-like
CDDcd001671.18E-102469No hitNo description
PROSITE profilePS5129419.3574124IPR017930Myb domain
SMARTSM007171.4E-1474122IPR001005SANT/Myb domain
PfamPF002491.1E-1375119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2477123IPR009057Homeodomain-like
CDDcd001679.41E-1079120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MMMMMMDEHF GWGKVAAEGW RKGPWTAEED RLLMEYVRVH GEGRWNSVAH LAGLRRNGKS  60
CRLRWVNYLR PDLKRGQITP HEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKAKVTSSR NEKPNARFLR KHQYHQQQQQ QQQQYWELLR QQQHRELLRQ QQQLNRQPAM  180
KAEPINNSQP QIRQESCTGI ISNFNPQIDH DQPGSLLLSL PEAISMEDHQ LWDGLLWNFE  240
DFHTNLTPNS AFGKANVHNL VTPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-281212417128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818440.0LN681844.1 Cucumis melo genomic scaffold, anchoredscaffold00057.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147192.10.0PREDICTED: transcription factor MYB24-like
TrEMBLM5XSD52e-96M5XSD5_PRUPE; Uncharacterized protein
STRINGVIT_05s0049g02260.t016e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.14e-75myb domain protein 79